Issues

• Incompatible chromosome column types

  bugenhancement
  bbglab/boostdm-pipeline#33 · Filter by author koszulordie opened on Jun 1, 2026

• Include new DMS and in silico prediction benchmark datasets

  bbglab/boostdm-pipeline#29 · Filter by author koszulordie opened on Apr 16, 2025

• n_samples incorrectly annotated in discovery.tsv.gz

  bug
  bbglab/boostdm-pipeline#28 · Filter by author odoveestrella opened on Apr 9, 2025

• Chromosome column encoded as INT instead of OBJ in the absence of sexual chromosomes

  bbglab/boostdm-pipeline#27 · Filter by author odoveestrella opened on Apr 7, 2025

• Decide a tabix version

  question
  bbglab/boostdm-pipeline#25 · Filter by author koszulordie opened on Dec 11, 2024 · patch boostdm-pipeline 2024.12
  1

• Remove boostwrap dependency

  invalid
  bbglab/boostdm-pipeline#23 · Filter by author koszulordie opened on Oct 7, 2024 · patch boostdm-pipeline 2024.12

• Refactor BoostDM Package

  enhancement
  bbglab/boostdm-pipeline#22 · Filter by author FedericaBrando opened on Sep 23, 2024 · patch boostdm-pipeline 2024.12
  2

  

• ALP integration | Output annotations for every gene-ttype in IntOGen and gene-CANCER

  enhancement
  bbglab/boostdm-pipeline#21 · Filter by author FedericaBrando opened on Sep 23, 2024
  1

• Check skipping of mutation with consequence variant: stop_retained_variant

  question
  bbglab/boostdm-pipeline#20 · Filter by author FedericaBrando opened on Sep 3, 2024 · patch boostdm-pipeline 2024.12
  1

• Driver imputation/masking post-processing step

  enhancement
  bbglab/boostdm-pipeline#17 · Filter by author koszulordie opened on Aug 7, 2024 · patch boostdm-pipeline 2024.12

• Should boostDM exceptions be handled as errors?

  enhancementrunning
  bbglab/boostdm-pipeline#11 · Filter by author koszulordie opened on May 6, 2024 · patch boostdm-pipeline 2024.12

• BoostDM | encode_consequence_type(data) inconsinstent when missing consequence.

  bug
  bbglab/boostdm-pipeline#1 · Filter by author FedericaBrando opened on Nov 30, 2023 · patch boostdm-pipeline 2024.12