Issues

• Replace Ephemeral Collections with Collection Adapters

  common-workflow-lab/galaxy#151 · Filter by author jmchilton opened on Mar 4, 2026

• Implement pickValue

  common-workflow-lab/galaxy#150 · Filter by author jmchilton opened on Mar 4, 2026

• Fix Workflow Step Output Ordering

  common-workflow-lab/galaxy#149 · Filter by author jmchilton opened on Mar 4, 2026

• Remove Galactic CWL Tools and Support from the Branch

  common-workflow-lab/galaxy#148 · Filter by author jmchilton opened on Mar 4, 2026

• Support outputs_to_working_directory

  common-workflow-lab/galaxy#146 · Filter by author mvdbeek opened on Sep 5, 2023

• UI for CWL workflow/tool execution

  common-workflow-lab/galaxy#145 · Filter by author mr-c opened on Oct 7, 2022
  2

• Update Cwl interactor to target newer upload tool

  common-workflow-lab/galaxy#143 · Filter by author mvdbeek opened on Dec 9, 2021

• Diagnosis of failing tests

  common-workflow-lab/galaxy#142 · Filter by author mvdbeek opened on Dec 8, 2021

• TypeError: unhashable type: 'list'

  common-workflow-lab/galaxy#141 · Filter by author mr-c opened on Nov 16, 2021
  2

• Better $(runtime) support

  common-workflow-lab/galaxy#135 · Filter by author mr-c opened on Nov 15, 2020

• CI: report with CWL conformance test badges

  common-workflow-lab/galaxy#134 · Filter by author mr-c opened on Nov 15, 2020

• Figuring out path forward on complicated output sources

  common-workflow-lab/galaxy#126 · Filter by author jmchilton opened on Nov 10, 2020
  8

• Parse creator and license information from CWL documents.

  friendliness/intermediate
  common-workflow-lab/galaxy#117 · Filter by author jmchilton opened on Nov 9, 2020
  1

• Re-visit library vs. Galaxy usage of UUIDs in tool loading.

  common-workflow-lab/galaxy#113 · Filter by author jmchilton opened on Jan 13, 2020

• Documentation on CWL-in-Galaxy

  common-workflow-lab/galaxy#103 · Filter by author stain opened on Apr 29, 2019
  1

• Refactor the hacky EphemeralCollection (inputs that are produced by expressions) in cwlbranch into something that can be included into Galaxy core.

  friendliness/hardtarget/galaxytarget/galaxycwlbranch
  common-workflow-lab/galaxy#101 · Filter by author jmchilton opened on Mar 23, 2019

• Implement workflow input expressions for core that CWL can leverage.

  friendliness/hardtarget/galaxytarget/galaxycwlbranch
  common-workflow-lab/galaxy#100 · Filter by author jmchilton opened on Mar 23, 2019

• Refactor specifying an object_id for workflows into Galaxy core.

  friendliness/intermediatetarget/galaxytarget/galaxycwlbranch
  common-workflow-lab/galaxy#96 · Filter by author jmchilton opened on Mar 22, 2019

• The tool 'tmpugCygk#infernal-cmsearch-v1.1.2.cwl' is missing. Cannot build workflow module

  common-workflow-lab/galaxy#94 · Filter by author ghost opened on Dec 27, 2018

• Map tar file to 'Directory' type

  common-workflow-lab/galaxy#93 · Filter by author ghost opened on Dec 27, 2018

• KeyError exception when saving a packed workflow

  common-workflow-lab/galaxy#92 · Filter by author ghost opened on Dec 27, 2018

• TypeError exception when importing a packed workflow

  common-workflow-lab/galaxy#91 · Filter by author ghost opened on Dec 27, 2018

• Run the EBI transcripts annotation workflows

  common-workflow-lab/galaxy#87 · Filter by author hmenager opened on Jun 30, 2018

• Allow Conditional Tool Parameters

  friendliness/hardtarget/galaxycwlbranchtarget/spec
  common-workflow-lab/galaxy#82 · Filter by author jmchilton opened on Sep 28, 2017

• Enable CWL Workflows to Specify Tools by "ID".

  friendliness/hardtarget/spec
  common-workflow-lab/galaxy#81 · Filter by author jmchilton opened on Sep 28, 2017
  1