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qiime_test_data

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forked from caporaso-lab-graveyard/qiime_test_data

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Test input and output for QIIME scripts.

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Name		Name	Last commit message	Last commit date
add_qiime_labels		add_qiime_labels
add_taxa		add_taxa
adjust_seq_orientation		adjust_seq_orientation
align_seqs		align_seqs
alpha_diversity		alpha_diversity
alpha_rarefaction		alpha_rarefaction
assign_taxonomy		assign_taxonomy
beta_diversity		beta_diversity
beta_diversity_through_plots		beta_diversity_through_plots
beta_significance		beta_significance
blast_wrapper		blast_wrapper
check_id_map		check_id_map
cluster_quality		cluster_quality
collate_alpha		collate_alpha
compare_3d_plots		compare_3d_plots
compare_alpha_diversity		compare_alpha_diversity
compare_categories		compare_categories
compare_distance_matrices		compare_distance_matrices
compare_taxa_summaries		compare_taxa_summaries
compute_core_microbiome		compute_core_microbiome
conditional_uncovered_probability		conditional_uncovered_probability
consensus_tree		consensus_tree
convert_fastaqual_fastq		convert_fastaqual_fastq
convert_otu_table_to_unifrac_sample_mapping		convert_otu_table_to_unifrac_sample_mapping
convert_unifrac_sample_mapping_to_otu_table		convert_unifrac_sample_mapping_to_otu_table
core_qiime_analyses		core_qiime_analyses
count_seqs		count_seqs
demultiplex_fasta		demultiplex_fasta
denoiser_preprocess		denoiser_preprocess
dissimilarity_mtx_stats		dissimilarity_mtx_stats
distance_matrix_from_mapping		distance_matrix_from_mapping
extract_seqs_by_sample_id		extract_seqs_by_sample_id
filter_alignment		filter_alignment
filter_distance_matrix		filter_distance_matrix
filter_fasta		filter_fasta
filter_otus_by_sample		filter_otus_by_sample
filter_otus_from_otu_table		filter_otus_from_otu_table
filter_samples_from_otu_table		filter_samples_from_otu_table
filter_tree		filter_tree
identify_missing_files/ALIGN_BQ7_		identify_missing_files/ALIGN_BQ7_
inflate_denoiser_output		inflate_denoiser_output
jackknifed_beta_diversity		jackknifed_beta_diversity
make_2d_plots		make_2d_plots
make_3d_plots		make_3d_plots
make_distance_boxplots		make_distance_boxplots
make_distance_comparison_plots		make_distance_comparison_plots
make_distance_histograms		make_distance_histograms
make_fastq		make_fastq
make_otu_heatmap_html		make_otu_heatmap_html
make_otu_network		make_otu_network
make_otu_table		make_otu_table
make_phylogeny		make_phylogeny
make_prefs_file		make_prefs_file
make_qiime_py_file		make_qiime_py_file
make_rarefaction_plots		make_rarefaction_plots
make_tep		make_tep
map_reads_to_reference		map_reads_to_reference
merge_mapping_files		merge_mapping_files
merge_otu_maps		merge_otu_maps
merge_otu_tables		merge_otu_tables
multiple_rarefactions		multiple_rarefactions
multiple_rarefactions_even_depth		multiple_rarefactions_even_depth
neighbor_joining		neighbor_joining
nmds		nmds
otu_category_significance		otu_category_significance
parallel_align_seqs_pynast		parallel_align_seqs_pynast
parallel_alpha_diversity		parallel_alpha_diversity
parallel_assign_taxonomy_blast		parallel_assign_taxonomy_blast
parallel_assign_taxonomy_rdp		parallel_assign_taxonomy_rdp
parallel_beta_diversity		parallel_beta_diversity
parallel_blast		parallel_blast
parallel_identify_chimeric_seqs		parallel_identify_chimeric_seqs
parallel_map_reads_to_reference		parallel_map_reads_to_reference
parallel_multiple_rarefactions		parallel_multiple_rarefactions
parallel_pick_otus_blast		parallel_pick_otus_blast
parallel_pick_otus_trie		parallel_pick_otus_trie
parallel_pick_otus_uclust_ref		parallel_pick_otus_uclust_ref
per_library_stats		per_library_stats
pick_otus		pick_otus
pick_otus_through_otu_table		pick_otus_through_otu_table
pick_reference_otus_through_otu_table		pick_reference_otus_through_otu_table
pick_rep_set		pick_rep_set
pick_subsampled_reference_otus_through_otu_table		pick_subsampled_reference_otus_through_otu_table
plot_rank_abundance_graph		plot_rank_abundance_graph
plot_semivariogram		plot_semivariogram
plot_taxa_summary		plot_taxa_summary
poller		poller
principal_coordinates		principal_coordinates
quality_scores_plot		quality_scores_plot
relatedness		relatedness
shared_phylotypes		shared_phylotypes
simsam		simsam
single_rarefaction		single_rarefaction
sort_otu_table		sort_otu_table
split_fasta_on_sample_ids		split_fasta_on_sample_ids
split_libraries		split_libraries
split_libraries_fastq		split_libraries_fastq
split_otu_table		split_otu_table
split_otu_table_by_taxonomy		split_otu_table_by_taxonomy
start_parallel_jobs		start_parallel_jobs

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qiime_test_data

Test input and output for QIIME scripts.

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Test input and output for QIIME scripts.

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